Afghan Voice Agency(AVA)-Saudi Arabia described the comments as insulting and called for respect for beliefs and religions.
Qatar summoned Indian ambassadors to its foreign ministry and demanded a public apology from India for the derogatory comments.
Kuwait has also summoned India's ambassador amid widespread calls on social media for a boycott of Indian goods in the Gulf.
Iran summoned Indian ambassador to Tehran to the Foreign Ministry and lodged a strong protest over derogatory remarks.
The Organization of Islamic Cooperation said the remarks came in a context of intensifying hatred and abuse toward Islam in India.
The Secretary-General of the Gulf Cooperation Council also issued a statement condemning Indian official's remarks.